Meeting:	SPARC OS Technical Committee

Meeting:	SPARC OS Technical Committee
Date:	Jan 15, 2025
Time:	2:00 pm - 2:23 pm
MUSC	Greg, Brigette
Iowa
LA CaTS	Ying
Children’s National
Case Western
OHSU	Jeremy
Stony Brook Medicine
Morehouse	Helen, Ruvina

Agenda

Last Meeting’s Minutes

Institutional Updates:

Louisiana Clinical & Translational Science Center:

12/18/2024

Using config/environments/testing.rb because config/environments/staging.rb threw error. Did MUSC have errors? Which config did MUSC use?

DEBUG [e617bc78]       Uglifier::Error: Unexpected token: keyword (const). To use ES6 syntax, harmony mode must be enabled with
Uglifier.new(:harmony => true). (Uglifier::Error)
--
412       SparkMD5.ArrayBuffer.hash = function(arr, raw) {
413         var hash = md51_array(new Uint8Array(arr)), ret = hex(hash);
414         return raw ? hexToBinaryString(ret) : ret;
415       };
416       return SparkMD5;
417     }));
418   })(sparkMd5);
419   var SparkMD5 = sparkMd5.exports;
  =>   const fileSlice = File.prototype.slice || File.prototype.mozSlice || File.prototype.webkitSlice;
421   class FileChecksum {
422     static create(file, callback) {
423       const instance = new FileChecksum(file);
424       instance.create(callback);
425     }4%)
426     constructor(file) {
427       this.file = file;
428       this.chunkSize = 2097152;
==
DEBUG [e617bc78]       /var/www/rails/sparc-rails/shared/bundle/ruby/3.3.0/gems/uglifier-4.2.0/lib/uglifier.rb:291:in `parse_re
sult'
/var/www/rails/sparc-rails/shared/bundle/ruby/3.3.0/gems/uglifier-4.2.0/lib/uglifier.rb:221:in `run_uglifyjs'

1/15/2025

Attempts to add lines to production, received error. https://github.com/reactjs/react-rails/issues/1176 . Is ok in staging. MUSC will follow up with devs working on the upgrade.

MUSC:

1/15/2025

Reminder
- Migration to Pivotal Tracker (going away end of April 2025) to Jira is underway. Also working toward cleaning up current story lists, so review requests may be more frequent as we determine study priorities and what will move into Jira.
Update
- Docker configuration file being added to SPARC for optional use
Upcoming Releases
- SPARC v3.13.0 - Ruby 3.3.1 & Ruby Rails 7.0.8.1 upgrades - Early Winter 2025
  - Working on these upgrades with server change; issues resolution
- SPARCFulfillment v3.6.0 Release - Winter 2025
- SPARC v3.14.0 Release - Spring 2025

Oregon Health & Science University:

12/18/2024

Not in attendance

1/15/2025

Not in attendance

Iowa

12/18/2024

On CWF v3.1 moving to v3.4. Mentioned aware of 3.5.0 also released, and made aware during meeting that v.3.6.0 will be released in a few months.
- On SPARC v3.7, moving to v3.12
- Also working on server upgrade

1/15/2025

Not in attendance

Case Western

12/18/2024

Not in attendance

1/15/2025

With other OS members, will be attending the Association for Clinical and Translational Science (ACTS) Translational Science 2025 Scientific Sessions conference in April with Case’s evaluation director

Children’s National

12/18/2024

Not in attendance

1/15/2025

Not in attendance

Stony Brook:

12/18/2024

Not in attendance

1/15/2025

Not in attendance

Morehouse:

12/18/2024

No new SPARC activity in terms of usage
- Working with Biomedical Informatics (BI) Core on getting their services in SPARC
- Plan to release after getting BI core in place
- Will review training resources and reach out if refresher needed
Should have their test environment ready
Ruvina will reach out with questions about Fulfillment if needed

1/15/2025

Upgrading to latest SPARC 3.12.1 and installing Fulfillment v3.5.1. Ruvina Noted the musc_installaton_ex package has an outdated references, so wanted to make sure the installation packages are up to date for current versions. MUSC will check and follow up with her.

20250115-Technical Committee Meeting Minutes

Agenda

Last Meeting’s Minutes

Institutional Updates:

Related content